PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007708.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 312aa    MW: 34005.5 Da    PI: 5.4348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007708.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.2e-15148194455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Do007708.1 148 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 194
                 699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.917144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12148194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-18148203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.0E-15149198No hitNo description
SuperFamilySSF474592.75E-17149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEDYSGLFMQ WAMDTLQQEH LAAAPVDDGS AEEATFPSLQ ALREASQAEE MVQELIGQPH  60
AANSWSSGDG DTADGSSVGN NADPALSRSG ISTTRPASWN FGAASAPPGR DVLSGVATAR  120
SLPELVYGSP PTRRAALLKS VGSMYAQDHI IAERKRREKI NQRFIELSTV IPGLKKMDKA  180
TILSDATRYV KELQEKIKAL EDGSNDRSIE SWVLVKKPCI VVPDEDSSPS WTSSGTPATL  240
RKPLPEIEAR FLEKRVMVRI HCEDGKGVAM RVLTEVEELH LSIIHANVMP FLATTLIITI  300
TAKASSFHFT FT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157ERKRRE
2153158RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659957e-47AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660974.11e-176PREDICTED: transcription factor bHLH25-like
TrEMBLK3YCM31e-176K3YCM3_SETIT; Uncharacterized protein
STRINGSi011972m1e-175(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-42bHLH family protein